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Article

Identifying stem cell gene expression patterns and phenotypic networks with AutoSOME.

Methods in molecular biology (Clifton, N.J.) - 1 Jan 2014

Newman Aaron M, Cooper James B

Abstract excerpt

Stem cells have the unique property of differentiation and self-renewal and play critical roles in normal development, tissue repair, and disease. To promote systems-wide analysis of cells and tissues, we developed AutoSOME, a machine-learning method for identifying coordinated gene expression patterns and correlated cellular phenotypes in whole-transcriptome data, without prior knowledge of cluster number or...

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PMID: 24743993
DOI: 10.1007/978-1-4939-0512-6_6

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

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