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Article

Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes.

Bioinformatics (Oxford, England) - 1 Sept 2013

Rashid Mamunur, Robles-Espinoza Carla Daniela, Rust Alistair G, Adams David J

Abstract excerpt

We have developed Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or...

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PMID: 23803469
DOI: 10.1093/bioinformatics/btt371
PMCID: PMC3740632

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-23803469-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

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