Article
Genome-wide SNP genotyping to infer the effects on gene functions in tomato.
DNA research : an international journal for rapid publication of reports on genes and genomes - 1 Jun 2013
Hirakawa Hideki, Shirasawa Kenta, Ohyama Akio, Fukuoka Hiroyuki, Aoki Koh, Rothan Christophe, Sato Shusei, Isobe Sachiko, Tabata Satoshi
Abstract excerpt
The genotype data of 7054 single nucleotide polymorphism (SNP) loci in 40 tomato lines, including inbred lines, F1 hybrids, and wild relatives, were collected using Illumina's Infinium and GoldenGate assay platforms, the latter of which was utilized in our previous study. The dendrogram based on the genotype data corresponded well to the breeding types of tomato and wild relatives. The SNPs were classified into...
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