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Article

Genome-wide SNP calling using next generation sequencing data in tomato.

Molecules and cells - 1 Jan 2014

Kim Ji-Eun, Oh Sang-Keun, Lee Jeong-Hee, Lee Bo-Mi, Jo Sung-Hwan

Abstract excerpt

The tomato (Solanum lycopersicum L.) is a model plant for genome research in Solanaceae, as well as for studying crop breeding. Genome-wide single nucleotide polymorphisms (SNPs) are a valuable resource in genetic research and breeding. However, to do discovery of genome-wide SNPs, most methods require expensive high-depth sequencing. Here, we describe a method for SNP calling using a modified version of SAMtools...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 24552708
DOI: 10.14348/molcells.2014.2241
PMCID: PMC3907006

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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