Article
Methods of tagSNP selection and other variables affecting imputation accuracy in swine.
BMC genetics - 21 Feb 2013
Badke Yvonne M, Bates Ronald O, Ernst Catherine W, Schwab Clint, Fix Justin, Van Tassell Curtis P, Steibel Juan P
Abstract excerpt
BACKGROUND: Genotype imputation is a cost efficient alternative to use of high density genotypes for implementing genomic selection. The objective of this study was to investigate variables affecting imputation accuracy from low density tagSNP (average distance between tagSNP from 100kb to 1Mb) sets in swine, selected using LD information, physical location, or accuracy for genotype imputation. We compared...
Topics
- Animals
- Genotype
- Haplotypes
- Polymorphism, Single Nucleotide
- Swine