Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications.

BMC genomics - 13 Feb 2013

Van Geystelen Anneleen, Decorte Ronny, Larmuseau Maarten H D

Abstract excerpt

BACKGROUND: Due to the rapid progress of next-generation sequencing (NGS) facilities, an explosion of human whole genome data will become available in the coming years. These data can be used to optimize and to increase the resolution of the phylogenetic Y chromosomal tree. Moreover, the exponential growth of known Y chromosomal lineages will require an automatic determination of the phylogenetic position of an...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Alleles
Share to Chromosomes, Human, Y

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genomics

Share to Haplotypes

Share to Phylogeny

Share to Polymorphism, Single Nucleotide

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 23405914
DOI: 10.1186/1471-2164-14-101
PMCID: PMC3583733

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications.PMID 23405914Read ↗

Updating the Y-chromosomal phylogenetic tree for forensic applications based on whole genome SNPs.Semantic proximity Read ↗

In silico detection of phylogenetic informative Y-chromosomal single nucleotide polymorphisms from whole genome sequencing data.Semantic proximity Read ↗

Towards a consensus Y-chromosomal phylogeny and Y-SNP set in forensics in the next-generation sequencing era.Semantic proximity Read ↗

Y-SNP Haplogroup Hierarchy Finder: a web tool for Y-SNP haplogroup assignment.Semantic proximity Read ↗

Defining Y-SNP variation among the Flemish population (Western Europe) by full genome sequencing.Semantic proximity Read ↗

Y-mer: A k-mer based method for determining human Y chromosome haplogroups from ultra-low sequencing depth dataSemantic proximity Read ↗

Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome.Semantic proximity Read ↗

A phylogenetic framework facilitates Y-STR variant discovery and classification via massively parallel sequencing.Semantic proximity Read ↗

Y-mer: A k-mer based method for determining human Y chromosome haplogroups from ultra-low sequencing depth dataSemantic proximity Read ↗

Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data.Semantic proximity Read ↗

CSYseq: The first Y-chromosome sequencing tool typing a large number of Y-SNPs and Y-STRs to unravel worldwide human population genetics.Semantic proximity Read ↗

Strategies for excluding false Y-chromosomal SNP entries from human genome databases.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.