Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

ARG-based genome-wide analysis of cacao cultivars.

BMC bioinformatics - 1 Jan 2012

Utro Filippo, Cornejo Omar Eduardo, Livingstone Donald, Motamayor Juan Carlos, Parida Laxmi

Abstract excerpt

BACKGROUND: Ancestral recombinations graph (ARG) is a topological structure that captures the relationship between the extant genomic sequences in terms of genetic events including recombinations. IRiS is a system that estimates the ARG on sequences of individuals, at genomic scales, capturing the relationship between these individuals of the species. Recently, this system was used to estimate the ARG of the...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Base Sequence
Share to Cacao
Share to Evolution, Molecular

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Genetic Linkage

Share to Genome, Plant

Share to Genomics

Share to Polymorphism, Single Nucleotide

Share to Recombination, Genetic

Source

Open in PubMed Open full text

Identifiers

PMID: 23281769
DOI: 10.1186/1471-2105-13-S19-S17
PMCID: PMC3526434

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

ARG-based genome-wide analysis of cacao cultivars.PMID 23281769Read ↗

Prediction of crossover recombination using parental genomes.Semantic proximity Read ↗

haploMAGIC: accurate phasing and detection of recombination in multiparental populations despite genotyping errors.Semantic proximity Read ↗

Topological Data Analysis Generates High-Resolution, Genome-wide Maps of Human Recombination.Semantic proximity Read ↗

A new method to reconstruct recombination events at a genomic scale.Semantic proximity Read ↗

Sexual dimorphism and the effect of wild introgressions on recombination in cassava (Manihot esculenta Crantz) breeding germplasm.Semantic proximity Read ↗

Comparing the performances of SSR and SNP markers for population analysis in Theobroma cacao L., as alternative approach to validate a new ddRADseq protocol for cacao genotyping.Semantic proximity Read ↗

Constructing founder sets under allelic and non-allelic homologous recombinationSemantic proximity Read ↗

MareyMap: an R-based tool with graphical interface for estimating recombination rates.Semantic proximity Read ↗

Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns.Semantic proximity Read ↗

ARG-walker: inference of individual specific strengths of meiotic recombination hotspots by population genomics analysis.Semantic proximity Read ↗

Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations.Semantic proximity Read ↗

Constructing a linkage-linkage disequilibrium map using dominant-segregating markers.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.