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haploMAGIC: accurate phasing and detection of recombination in multiparental populations despite genotyping errors.

G3 (Bethesda, Md.) - 7 Aug 2024

Montero-Tena Jose A, Abdollahi Sisi Nayyer, Kox Tobias, Abbadi Amine, Snowdon Rod J, Golicz Agnieszka A

Abstract excerpt

Recombination is a key mechanism in breeding for promoting genetic variability. Multiparental populations (MPPs) constitute an excellent platform for precise genotype phasing, identification of genome-wide crossovers (COs), estimation of recombination frequencies, and construction of recombination maps. Here, we introduce haploMAGIC, a pipeline to detect COs in MPPs with single-nucleotide polymorphism (SNP) data...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 38808682
DOI: 10.1093/g3journal/jkae109
PMCID: PMC11304941

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