Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region.

PloS one - 1 Jan 2012

Endale Ahanda Marie-Laure, Fritz Eric R, Estellé Jordi, Hu Zhi-Liang, Madsen Ole, Groenen Martien A M, Beraldi Dario, Kapetanovic Ronan, Hume David A, Rowland Robert R R, Lunney Joan K, Rogel-Gaillard Claire, Reecy James M, Giuffra Elisabetta

Abstract excerpt

THE SLA (swine leukocyte antigen, MHC: SLA) genes are the most important determinants of immune, infectious disease and vaccine response in pigs; several genetic associations with immunity and swine production traits have been reported. However, most of the current knowledge on SLA is limited to gene coding regions. MicroRNAs (miRNAs) are small molecules that post-transcriptionally regulate the expression of a...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to 3' Untranslated Regions
Share to Binding Sites

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Conserved Sequence

Share to Histocompatibility Antigens Class I

Share to Histocompatibility Antigens Class II

Share to MicroRNAs

Share to Organ Specificity

Share to Sequence Analysis, RNA

Source

Open in PubMed Open full text

Identifiers

PMID: 23139801
DOI: 10.1371/journal.pone.0048607
PMCID: PMC3490867

Genes

SLA
TAP1

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region.PMID 23139801Read ↗

Genome-wide profiling of microRNAs and prediction of mRNA targets in 17 bovine tissuesSemantic proximity Read ↗

Sequence variations of the locus-specific 5' untranslated regions of SLA class I genes and the development of a comprehensive genomic DNA-based high-resolution typing method for SLA-2.Semantic proximity Read ↗

Application of the targeted sequencing approach reveals the single nucleotide polymorphism (SNP) repertoire in microRNA genes in the pig genome.Semantic proximity Read ↗

Integrated analysis of GWAS and molQTLs reveals cell-specific genetic variants in the porcine immune system.Semantic proximity Read ↗

Novel and Haplotype Specific MicroRNAs Encoded by the Major Histocompatibility Complex.Semantic proximity Read ↗

Analysis of porcine MHC using microarrays.Semantic proximity Read ↗

miRNASNP-v4: a comprehensive database for miRNA-related SNPs across 17 species.Semantic proximity Read ↗

MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle.Semantic proximity Read ↗

Variability in porcine microRNA genes and its association with mRNA expression and lipid phenotypes.Semantic proximity Read ↗

Variability in porcine microRNA genes and its association with mRNA expression and lipid phenotypesSemantic proximity Read ↗

Principles of miRNA-mRNA interactions: beyond sequence complementarity.Semantic proximity Read ↗

Systematic Identification and Molecular Characteristics of Long Noncoding RNAs in Pig Tissues.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.