Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Special features of RAD Sequencing data: implications for genotyping.

Molecular ecology - 1 Jun 2013

Davey John W, Cezard Timothée, Fuentes-Utrilla Pablo, Eland Cathlene, Gharbi Karim, Blaxter Mark L

Abstract excerpt

Restriction site-associated DNA Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods, RAD-Seq produces stochastic count data and requires sensitive analysis to develop or genotype markers accurately. We show that there are several sources of bias specific to RAD-Seq that are not explicitly addressed by current genotyping tools,...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Base Sequence
Share to Caenorhabditis elegans
Share to Chromosome Mapping

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Genetic Markers

Share to Genotyping Techniques

Share to High-Throughput Nucleotide Sequencing

Share to Restriction Mapping

Share to Sequence Analysis, DNA

Source

Open in PubMed Open full text

Identifiers

PMID: 23110438
DOI: 10.1111/mec.12084
PMCID: PMC3712469

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Special features of RAD Sequencing data: implications for genotyping.PMID 23110438Read ↗

SNP discovery and genotyping for evolutionary genetics using RAD sequencing.Semantic proximity Read ↗

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species.Semantic proximity Read ↗

Population genomic analysis of model and nonmodel organisms using sequenced RAD tags.Semantic proximity Read ↗

A reference-free approach to analyse RADseq data using standard next generation sequencing toolkits.Semantic proximity Read ↗

The effect of RAD allele dropout on the estimation of genetic variation within and between populations.Semantic proximity Read ↗

Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage.Semantic proximity Read ↗

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling.Semantic proximity Read ↗

Deriving genotypes from RAD-seq short-read data using Stacks.Semantic proximity Read ↗

RAD paired-end sequencing for local de novo assembly and SNP discovery in non-model organisms.Semantic proximity Read ↗

Estimating and accounting for genotyping errors in RAD-seq experiments.Semantic proximity Read ↗

Serial sequencing of isolength RAD tags for cost-efficient genome-wide profiling of genetic and epigenetic variations.Semantic proximity Read ↗

Population Genomics Analysis with RAD, Reprised: Stacks 2.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.