Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

PLoS computational biology - 1 Mar 2011

Oberhardt Matthew A, Puchałka Jacek, Martins dos Santos Vítor A P, Papin Jason A

Abstract excerpt

In the past decade, over 50 genome-scale metabolic reconstructions have been built for a variety of single- and multi- cellular organisms. These reconstructions have enabled a host of computational methods to be leveraged for systems-analysis of metabolism, leading to greater understanding of observed phenotypes. These methods have been sparsely applied to comparisons between multiple organisms, however, due...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Software
Share to Biotechnology
Share to Databases, Factual

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Gene Expression Regulation, Bacterial

Share to Genome

Share to Genome, Bacterial

Share to Metabolic Networks and Pathways

Share to Pseudomonas

Source

Open in PubMed Open full text

Identifiers

PMID: 21483480
DOI: 10.1371/journal.pcbi.1001116
PMCID: PMC3068926

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.PMID 21483480Read ↗

A Systematic Assessment Of Current Genome-Scale Metabolic Reconstruction ToolsSemantic proximity Read ↗

Model-driven characterization of functional diversity of Pseudomonas aeruginosa clinical isolates with broadly representative phenotypes.Semantic proximity Read ↗

Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions.Semantic proximity Read ↗

Fast automated reconstruction of genome-scale metabolic models for microbial species and communitiesSemantic proximity Read ↗

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli.Semantic proximity Read ↗

Reconstructing organisms in silico: genome-scale models and their emerging applications.Semantic proximity Read ↗

Model-driven characterization of functional diversity of <i>Pseudomonas aeruginosa</i> clinical isolates with broadly representative phenotypesSemantic proximity Read ↗

Integration of Comparative Genomics with Genome-Scale Metabolic Modeling to Investigate Strain-Specific Phenotypical Differences.Semantic proximity Read ↗

A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation.Semantic proximity Read ↗

Predicting strain-specific metabolic capabilities in the Genus <i>Pseudomonas</i> using a Flux-to-AI approach unravels hidden cell envelope propertiesSemantic proximity Read ↗

Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods.Semantic proximity Read ↗

metaGEM: reconstruction of genome scale metabolic models directly from metagenomesSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.