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Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array.

BMC genomics - 21 Jan 2011

Liu Shikai, Zhou Zunchun, Lu Jianguo, Sun Fanyue, Wang Shaolin, Liu Hong, Jiang Yanliang, Kucuktas Huseyin, Kaltenboeck Ludmilla, Peatman Eric, Liu Zhanjiang

Abstract excerpt

BACKGROUND: Single nucleotide polymorphisms (SNPs) have become the marker of choice for genome-wide association studies. In order to provide the best genome coverage for the analysis of performance and production traits, a large number of relatively evenly distributed SNPs are needed. Gene-associated SNPs may fulfill these requirements of large numbers and genome wide distribution. In addition, gene-associated...

Topics

Animals
Catfishes
Expressed Sequence Tags
Gene Expression Profiling
Genome-Wide Association Study
Polymorphism, Single Nucleotide
Sequence Analysis, DNA

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Identifiers

PMID: 21255432
DOI: 10.1186/1471-2164-12-53
PMCID: PMC3033819

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