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Article

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.

BMC genomics - 5 Nov 2012

Liu Shikai, Zhang Yu, Zhou Zunchun, Waldbieser Geoff, Sun Fanyue, Lu Jianguo, Zhang Jiaren, Jiang Yanliang, Zhang Hao, Wang Xiuli, Rajendran K V, Khoo Lester, Kucuktas Huseyin, Peatman Eric, Liu Zhanjiang

Abstract excerpt

BACKGROUND: Upon the completion of whole genome sequencing, thorough genome annotation that associates genome sequences with biological meanings is essential. Genome annotation depends on the availability of transcript information as well as orthology information. In teleost fish, genome annotation is seriously hindered by genome duplication. Because of gene duplications, one cannot establish orthologies simply...

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PMID: 23127152
DOI: 10.1186/1471-2164-13-595
PMCID: PMC3582483

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

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