Haplotype inference from short sequence reads using a population genealogical history model.

Abstract excerpt

High-throughput sequencing is currently a major transforming technology in biology. In this paper, we study a population genomics problem motivated by the newly available short reads data from high-throughput sequencing. In this problem, we are given short reads collected from individuals in a population. The objective is to infer haplotypes with the given reads. We first formulate the computational problem of...

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