Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

inGAP: an integrated next-generation genome analysis pipeline.

Bioinformatics (Oxford, England) - 1 Jan 2010

Qi Ji, Zhao Fangqing, Buboltz Anne, Schuster Stephan C

Abstract excerpt

SUMMARY: We develop a novel mining pipeline, Integrative Next-generation Genome Analysis Pipeline (inGAP), guided by a Bayesian principle to detect single nucleotide polymorphisms (SNPs), insertion/deletions (indels) by comparing high-throughput pyrosequencing reads with a reference genome of related organisms. inGAP can be applied to the mapping of both Roche/454 and Illumina reads with no restriction of read...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Chromosome Mapping
Share to DNA Mutational Analysis

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome

Share to Pancreatitis-Associated Proteins

Share to Software

Share to Systems Integration

Share to User-Computer Interface

Source

Open in PubMed Open full text

Identifiers

PMID: 19880367
DOI: 10.1093/bioinformatics/btp615
PMCID: PMC2796817

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

inGAP: an integrated next-generation genome analysis pipeline.PMID 19880367Read ↗

Genome sequencing and assembly.Semantic proximity Read ↗

Comprehensive Survey and Guidance for Building High Quality Genome AssemblySemantic proximity Read ↗

The Journey of Genome SequencingSemantic proximity Read ↗

An integrated SNP mining and utilization (ISMU) pipeline for next generation sequencing data.Semantic proximity Read ↗

The genome Assembly Archive: a new public resource.Semantic proximity Read ↗

Next-generation sequencing techniques for eukaryotic microorganisms: sequencing-based solutions to biological problems.Semantic proximity Read ↗

Robust high throughput prokaryote <i>de novo</i> assembly and improvement pipeline for Illumina dataSemantic proximity Read ↗

From raw reads to trees: Whole genome SNP phylogenetics across the tree of lifeSemantic proximity Read ↗

Genome Variation Map: a worldwide collection of genome variations across multiple species.Semantic proximity Read ↗

AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework.Semantic proximity Read ↗

Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.Semantic proximity Read ↗

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.