Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Objective evaluation measures of genetic marker selection in large-scale SNP genotyping.

Journal of bioinformatics and computational biology - 1 Oct 2008

Kaminuma Eli, Masuya Hiroshi, Miura Ikuo, Motegi Hiromi, Takahasi Kenzi R, Nakazawa Miki, Matsui Minami, Gondo Yoichi, Noda Tetsuo, Shiroishi Toshihiko, Wakana Shigeharu, Toyoda Tetsuro

Abstract excerpt

High-throughput single nucleotide polymorphism (SNP) genotyping systems provide two kinds of fluorescent signals detected from different alleles. In current technologies, the process of genotype discrimination requires subjective judgments by expert operators, even when using clustering algorithms. Here, we propose two evaluation measures to manage fluorescent scatter data with nonclear plot aggregation. The...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Data Interpretation, Statistical

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA Mutational Analysis

Share to Genetic Markers

Share to Oligonucleotide Array Sequence Analysis

Share to Reproducibility of Results

Share to Sensitivity and Specificity

Share to Spectrometry, Fluorescence

Source

Identifiers

PMID: 18942158
DOI: 10.1142/s021972000800376x

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Objective evaluation measures of genetic marker selection in large-scale SNP genotyping.PMID 18942158Read ↗

A Hierarchical Clustering Method of Selecting Kernel SNP to Unify Informative SNP and Tag SNP.Semantic proximity Read ↗

Automatic scoring and quality assessment using accuracy bounds for FP-TDI SNP genotyping data.Semantic proximity Read ↗

Statistical comparison framework and visualization scheme for ranking-based algorithms in high-throughput genome-wide studies.Semantic proximity Read ↗

Accurate automated clustering of two-dimensional data for single-nucleotide polymorphism genotyping by a combination of clustering methods: evaluation by large-scale real data.Semantic proximity Read ↗

Using quality measures to facilitate allele calling in high-throughput genotyping.Semantic proximity Read ↗

SAQC: SNP array quality control.Semantic proximity Read ↗

Consequences of PCA graphs, SNP codings, and PCA variants for elucidating population structureSemantic proximity Read ↗

Automated SNP genotype clustering algorithm to improve data completeness in high-throughput SNP genotyping datasets from custom arrays.Semantic proximity Read ↗

Silhouette scores for assessment of SNP genotype clusters.Semantic proximity Read ↗

Methods for analysis and visualization of SNP genotype data for complex diseases.Semantic proximity Read ↗

SNPQC--an R pipeline for quality control of Illumina SNP genotyping array data.Semantic proximity Read ↗

TRES: Identification of Discriminatory and Informative SNPs from Population Genomic Data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.