Article
Identification of homologous, homoeologous and paralogous sequence variants in an outbreeding allopolyploid species based on comparison with progenitor taxa.
Molecular genetics and genomics : MGG - 1 Oct 2008
Hand Melanie L, Ponting Rebecca C, Drayton Michelle C, Lawless Kahlil A, Cogan Noel O I, Charles Brummer E, Sawbridge Timothy I, Spangenberg German C, Smith Kevin F, Forster John W
Abstract excerpt
The combination of homologous, homoeologous and paralogous classes of sequence variation presents major challenges for SNP discovery in outbreeding allopolyploid species. Previous in vitro gene-associated SNP discovery studies in the allotetraploid forage legume white clover (Trifolium repens L.) were vulnerable to such effects, leading to prohibitive levels of attrition during SNP validation. Identification of...
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