Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Optimizing automated AFLP scoring parameters to improve phylogenetic resolution.

Systematic biology - 1 Jun 2008

Holland Barbara R, Clarke Andrew C, Meudt Heidi M

Abstract excerpt

The amplified fragment length polymorphism (AFLP) technique is an increasingly popular component of the phylogenetic toolbox, particularly for plant species. Technological advances in capillary electrophoresis now allow very precise estimates of DNA fragment mobility and amplitude, and current AFLP software allows greater control of data scoring and the production of the binary character matrix. However, for AFLP...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Alleles
Share to Amplified Fragment Length Polymorphism Analysis
Share to Computational Biology

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Ipomoea batatas

Share to Phylogeny

Share to Polymorphism, Genetic

Share to Software

Source

Identifiers

PMID: 18570031
DOI: 10.1080/10635150802044037

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Optimizing automated AFLP scoring parameters to improve phylogenetic resolution.PMID 18570031Read ↗

Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring.Semantic proximity Read ↗

Almost forgotten or latest practice? AFLP applications, analyses and advances.Semantic proximity Read ↗

Statistical analysis of amplified fragment length polymorphism data: a toolbox for molecular ecologists and evolutionists.Semantic proximity Read ↗

MsatAllele_1.0: An R package to visualize the binning of microsatellite alleles.Semantic proximity Read ↗

Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus.Semantic proximity Read ↗

TANDEM: integrating automated allele binning into genetics and genomics workflows.Semantic proximity Read ↗

Evaluating the relationship between evolutionary divergence and phylogenetic accuracy in AFLP data sets.Semantic proximity Read ↗

AMaCAID: a useful tool for Accurate Marker Choice for Accession Identification and Discrimination.Semantic proximity Read ↗

Species delimitation using genome-wide SNP data.Semantic proximity Read ↗

A new approach to improve the scoring of mononucleotide microsatellite loci.Semantic proximity Read ↗

Bayesian statistical treatment of the fluorescence of AFLP bands leads to accurate genetic structure inference.Semantic proximity Read ↗

AFLP fingerprinting for assessing intraspecific variation and genome mapping in mites.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.