Article
PAML 4: phylogenetic analysis by maximum likelihood.
Molecular biology and evolution - 1 Aug 2007
Yang Ziheng
Abstract excerpt
PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which can be used to estimate parameters in models of sequence evolution and to test interesting biological hypotheses....
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