Article
Inferring evolutionary trees with PAUP*.
Current protocols in bioinformatics - 1 Feb 2003
Wilgenbusch James C, Swofford David
Abstract excerpt
This unit provides a general description of reconstructing evolutionary trees using PAUP* 4.0. The protocol takes users through an example analysis of mitochondrial DNA sequence data using the parsimony and the likelihood criteria to infer optimal trees. The protocol also discusses searching options available in PAUP* and demonstrates how to import non-NEXUS formats. Finally, a general discussion is given...
Topics
- Computer Simulation
- DNA Mutational Analysis
- Evolution, Molecular
- Genetic Variation
- Models, Genetic
- Phylogeny
- Sequence Alignment
- Sequence Analysis, DNA
- Software