Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Divergent evolution of a structural proteome: phenomenological models.

Biophysical journal - 1 Feb 2007

Roland C Brian, Shakhnovich Eugene I

Abstract excerpt

We develop models of the divergent evolution of genomes; the elementary object of sequence dynamics is the protein structural domain. To identify patterns of organization that reflect mechanisms of evolution, we consider the individual genomes of many procaryote species, studying the arrangement of protein structural domains in the space of all polypeptide structures. We view the network of structural...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacterial Proteins
Share to Chromosome Mapping
Share to Computer Simulation

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Evolution, Molecular

Share to Models, Genetic

Share to Models, Statistical

Share to Protein Structure, Tertiary

Share to Proteome

Source

Open in PubMed Open full text

Identifiers

PMID: 17071665
DOI: 10.1529/biophysj.106.081265
PMCID: PMC1779990

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026. Manifest publication-graph-cohort-2026-09-05.1.

Source receipt: pubmed, retrieved 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Divergent evolution of a structural proteome: phenomenological models.PMID 17071665Read ↗

Conservation and topology of protein interaction networks under duplication-divergence evolution.Semantic proximity Read ↗

Geometric evolutionary dynamics of protein interaction networks.Semantic proximity Read ↗

A first-principles model of early evolution: emergence of gene families, species, and preferred protein folds.Semantic proximity Read ↗

Evolutionary velocity with protein language models predicts evolutionary dynamics of diverse proteins.Semantic proximity Read ↗

Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?Semantic proximity Read ↗

Sequence-related human proteins cluster by degree of evolutionary conservation.Semantic proximity Read ↗

Network analyses structure genetic diversity in independent genetic worlds.Semantic proximity Read ↗

Birth and death of protein domains: a simple model of evolution explains power law behavior.Semantic proximity Read ↗

The small-world dynamics of tree networks and data mining in phyloinformatics.Semantic proximity Read ↗

Emergent time scales of epistasis in protein evolution.Semantic proximity Read ↗

Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties.Semantic proximity Read ↗

Evolution of off-lattice model proteins under ligand binding constraints.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.