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Article

SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data.

BMC genomics - 31 Oct 2005

Huentelman Matthew J, Craig David W, Shieh Albert D, Corneveaux Jason J, Hu-Lince Diane, Pearson John V, Stephan Dietrich A

Abstract excerpt

BACKGROUND: High throughput microarray-based single nucleotide polymorphism (SNP) genotyping has revolutionized the way genome-wide linkage scans and association analyses are performed. One of the key features of the array-based GeneChip Mapping 10K Array from Affymetrix is the automated SNP calling algorithm. The Affymetrix algorithm was trained on a database of ethnically diverse DNA samples to create SNP call...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 16262895
DOI: 10.1186/1471-2164-6-149
PMCID: PMC1280925

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

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