Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Single-nucleotide polymorphism phylotyping of Escherichia coli.

Applied and environmental microbiology - 1 Aug 2005

Hommais Florence, Pereira Sabrina, Acquaviva Cécile, Escobar-Páramo Patricia, Denamur Erick

Abstract excerpt

We describe a rapid and easily automated phylogenetic grouping technique based on analysis of bacterial genome single-nucleotide polymorphisms (SNPs). We selected 13 SNPs derived from a complete sequence analysis of 11 essential genes previously used for multilocus sequence typing (MLST) of 30 Escherichia coli strains representing the genetic diversity of the species. The 13 SNPs were localized in five genes,...

Topics

Bacterial Typing Techniques
Escherichia coli
Escherichia coli Infections
Escherichia coli Proteins
Humans
Phylogeny
Polymorphism, Single Nucleotide

Source

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Identifiers

PMID: 16085876
DOI: 10.1128/AEM.71.8.4784-4792.2005
PMCID: PMC1183324

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 30 Aug 2026.

Community interpretation

Discuss the evidence

Ask a question, add context or challenge an interpretation. Community activity is separate from scientific evidence strength.

0

discussions

0

replies

Citations encouraged

Claims remain attributable.

No discussion yet

Be the first to add a careful, cited interpretation.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Single-nucleotide polymorphism phylotyping of Escherichia coli.PMID 16085876Read ↗

Genotyping of Enterococcus faecalis and Enterococcus faecium isolates by use of a set of eight single nucleotide polymorphisms.Semantic proximity Read ↗

Highly discriminatory single-nucleotide polymorphism interrogation of Escherichia coli by use of allele-specific real-time PCR and eBURST analysis.Semantic proximity Read ↗

Development of a new molecular subtyping tool for Salmonella enterica serovar Enteritidis based on single nucleotide polymorphism genotyping using PCR.Semantic proximity Read ↗

Classification of pathogenic microbes using a minimal set of single nucleotide polymorphisms derived from whole genome sequences.Semantic proximity Read ↗

Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method.Semantic proximity Read ↗

FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny.Semantic proximity Read ↗

Use of fimH single-nucleotide polymorphisms for strain typing of clinical isolates of Escherichia coli for epidemiologic investigation.Semantic proximity Read ↗

Real-Time PCR Typing of Escherichia coli Based on Multiple Single Nucleotide Polymorphisms--a Convenient and Rapid Method.Semantic proximity Read ↗

The <scp>C</scp> lermont <i> <scp>E</scp> scherichia coli </i> phylo‐typing method revisited: improvement of specificity and detection of new phylo‐groupsSemantic proximity Read ↗

Identifying geographic origins of the Escherichia coli isolates from food by a method based on single-nucleotide polymorphisms.Semantic proximity Read ↗

ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping.Semantic proximity Read ↗

Navigating the future of bacterial molecular epidemiology.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.