Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).

Bioinformatics (Oxford, England) - 15 May 2005

Zhang Fengkai, Zhao Zhongming

Abstract excerpt

UNLABELLED: SNPNB is a user-friendly and platform-independent application for analyzing Single Nucleotide Polymorphism NeighBoring sequence context and nucleotide bias patterns, and subsequently evaluating the effective SNP size for the bias patterns observed from the whole data. It was implemented by Java and Perl. SNPNB can efficiently handle genome-wide or chromosome-wide SNP data analysis in a PC or a...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Base Pair Mismatch
Share to Computer Graphics

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genome, Human

Share to Nucleotides

Share to Sequence Alignment

Share to Software

Share to User-Computer Interface

Source

Identifiers

PMID: 15769840
DOI: 10.1093/bioinformatics/bti377

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

SNPNB: analyzing neighboring-nucleotide biases on single nucleotide polymorphisms (SNPs).PMID 15769840Read ↗

NGS_SNPAnalyzer: a desktop software supporting genome projects by identifying and visualizing sequence variations from next-generation sequencing data.Semantic proximity Read ↗

Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome.Semantic proximity Read ↗

QualitySNPng: a user-friendly SNP detection and visualization tool.Semantic proximity Read ↗

A novel statistical method to estimate the effective SNP size in vertebrate genomes and categorized genomic regions.Semantic proximity Read ↗

Accurate prediction of functional effects for variants by combining gradient tree boosting with optimal neighborhood properties.Semantic proximity Read ↗

The complementary neighborhood patterns and methylation-to-mutation likelihood structures of 15,110 single-nucleotide polymorphisms in the bovine genome.Semantic proximity Read ↗

SNP ID-info: SNP ID searching and visualization platform.Semantic proximity Read ↗

Neighboring-nucleotide effects on the mutation patterns of the rice genome.Semantic proximity Read ↗

The influence of neighboring-nucleotide composition on single nucleotide polymorphisms (SNPs) in the mouse genome and its comparison with human SNPs.Semantic proximity Read ↗

Nautilus: a bioinformatics package for the analysis of HIV type 1 targeted deep sequencing data.Semantic proximity Read ↗

Dynamic programming for single nucleotide polymorphism ID identification in systematic association studies.Semantic proximity Read ↗

Analysis of context-dependent errors for illumina sequencing.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.