Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Nautilus: a bioinformatics package for the analysis of HIV type 1 targeted deep sequencing data.

AIDS research and human retroviruses - 1 Oct 2013

Kijak Gustavo H, Pham Phuc, Sanders-Buell Eric, Harbolick Elizabeth A, Eller Leigh Anne, Robb Merlin L, Michael Nelson L, Kim Jerome H, Tovanabutra Sodsai

Abstract excerpt

The advent of next generation sequencing technologies is providing new insight into HIV-1 diversity and evolution, which has created the need for bioinformatics tools that could be applied to the characterization of viral quasispecies. Here we present Nautilus, a bioinformatics package for the an...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computational Biology
Share to Gene Frequency
Share to Haplotypes

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to High-Throughput Nucleotide Sequencing

Share to HIV Infections

Share to Internet

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 23809062
DOI: 10.1089/AID.2013.0175
PMCID: PMC3785804

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-23809062-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Nautilus: a bioinformatics package for the analysis of HIV type 1 targeted deep sequencing data.PMID 23809062Read ↗

Quasispecies Analyses of the HIV-1 Near-full-length Genome With Illumina MiSeqSemantic proximity Read ↗

The HIV mutation browser: a resource for human immunodeficiency virus mutagenesis and polymorphism data.Semantic proximity Read ↗

Targeted deep sequencing of HIV-1 using the IonTorrentPGM platform.Semantic proximity Read ↗

Estimating time of HIV-1 infection from next-generation sequence diversitySemantic proximity Read ↗

Estimating time of HIV-1 infection from next-generation sequence diversitySemantic proximity Read ↗

DiMA: sequence diversity dynamics analyser for viruses.Semantic proximity Read ↗

APHIX: Analysis Pipeline for HIV-1 Isoform eXploration Using Long-read RNA Sequencing DataSemantic proximity Read ↗

Development of a User-Friendly Pipeline for Mutational Analyses of HIV Using Ultra-Accurate Maximum-Depth Sequencing.Semantic proximity Read ↗

Analysis of dinucleotide signatures in HIV-1 subtype B genomes.Semantic proximity Read ↗

Geno2pheno[454]: a Web server for the prediction of HIV-1 coreceptor usage from next-generation sequencing data.Semantic proximity Read ↗

V-Phaser 2: variant inference for viral populations.Semantic proximity Read ↗

The HIVToolbox 2 web system integrates sequence, structure, function and mutation analysis.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.