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Construction of the ETECFinder database for the characterisation of enterotoxigenic <i>Escherichia coli</i> (ETEC) and revision of the <i>VirulenceFinder</i> webtool at the CGE website

2023-04-11

Abstract excerpt

<h4>ABSTRACT</h4> The identification of pathogens is essential for effective surveillance and outbreak detection, which has been facilitated by the decreasing cost of whole-genome sequencing (WGS). However, extracting relevant virulence genes from WGS data remains a challenge. In this study, we developed a web-based tool to predict virulence-associated genes in enterotoxigenic Escherichia coli (ETEC), including...

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Literature Corpus work
e264c1ec-75ac-5ed2-8a90-1630f105856b
DOI
10.1101/2023.04.11.536449
Open publication

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Construction of the ETECFinder database for the characterisation of enterotoxigenic <i>Escherichia coli</i> (ETEC) and revision of the <i>VirulenceFinder</i> webtool at the CGE websiteDOI 10.1101/2023.04.11.536449
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