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Article

In Silico Genotyping of Escherichia coli Isolates for Extraintestinal Virulence Genes by Use of Whole-Genome Sequencing Data.

Journal of clinical microbiology - 22 Sept 2020

Malberg Tetzschner Anna Maria, Johnson James R, Johnston Brian D, Lund Ole, Scheutz Flemming

Abstract excerpt

Extraintestinal pathogenic Escherichia coli (ExPEC) is the leading cause in humans of urinary tract infection and bacteremia. The previously published web tool VirulenceFinder (http://cge.cbs.dtu.dk/services/VirulenceFinder/) uses whole-genome sequencing (WGS) data for in silico characterization of E. coli isolates and enables researchers and clinical health personnel to quickly extract and interpret...

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Identifiers

PMID: 32669379
DOI: 10.1128/JCM.01269-20
PMCID: PMC7512150

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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