Back to search

Article

TCGAnalyzeR: a web application for integrative visualization of molecular and clinical data of cancer patients for cohort and associated gene discovery

2023-01-21

Abstract excerpt

<h4>Motivation</h4> The vast size and complexity of The Cancer Genome Atlas (TCGA) database with multidimensional molecular and clinical data of ~11,000 cancer patients of 33 cancer types challenge the effective utilization of this valuable resource. Therefore, we built a web application named TCGAnalyzeR with the main idea of presenting an integrative visualization of mutations, transcriptome profile, copy numbe...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work
cc83cdaf-80b4-5a8b-b6f2-2ec663f47831
DOI
10.1101/2023.01.20.524925
Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest
Interactive article relationship graphSelect a related publication card to move it into the centre and load its closest explainable connections. Solid lines are source-backed structured connections. Dashed lines are semantic discovery signals and are not scientific evidence.
TCGAnalyzeR: a web application for integrative visualization of molecular and clinical data of cancer patients for cohort and associated gene discoveryDOI 10.1101/2023.01.20.524925
Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics BrowserSemantic proximity
A user guide for the online exploration and visualization of PCAWG data.Semantic proximity
Oncogenomic portals for the visualization and analysis of genome-wide cancer data.Semantic proximity
TCGAplot: an R package for integrative pan-cancer analysis and visualization of TCGA multi-omics data.Semantic proximity
Big data visualization identifies the multidimensional molecular landscape of human gliomas.Semantic proximity
The Personalized Cancer Network Explorer (PeCaX) as a visual analytics tool to support molecular tumor boardsSemantic proximity
MOAHIT: a web tool for visualizing tumor multi-omics data with human anatomy heatmapsSemantic proximity
The UCSC Cancer Genomics Browser: update 2015.Semantic proximity
Explorative Discovery of Gene Signatures and Clinotypes in Glioblastoma Cancer Through GeneTerrain Knowledge Map RepresentationSemantic proximity
CVCDAP: an integrated platform for molecular and clinical analysis of cancer virtual cohorts.Semantic proximity
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.Semantic proximity
Comprehensive Atlas of Cancer-Type-Specific Molecular Features from Comparative Analysis of TCGA DataSemantic proximity
Select a neighboring publication to make it the new centre.