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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing <i>Escherichia coli</i> in irrigation water

2020-07-18

Abstract excerpt

<h4>ABSTRACT</h4> Shiga toxin-producing Escherichia coli (STEC) contamination of agricultural water might be an important factor to recent foodborne illness and outbreaks involving leafy greens. Whole genome sequencing generation of closed bacterial genomes plays an important role in source tracking. We aimed to determine the limits of detection and classification of STECs by qPCR and nanopore sequencing using e...

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Literature Corpus work
cacb898c-182e-5b16-a906-7579f60d51d0
DOI
10.1101/2020.07.17.209718
Open publication

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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing <i>Escherichia coli</i> in irrigation waterDOI 10.1101/2020.07.17.209718
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