Article

ImmCellTyper: an integrated computational pipeline for systematic mining of Mass Cytometry data to assist deep immune profiling

2024-01-17

Abstract excerpt

Mass cytometry, also known as Cytometry by time-of-flight (CyTOF), is a cutting-edge high-dimensional technology for profiling marker expression at the single-cell level. This technology significantly advances clinical research in immune monitoring and the interrogation of immune cell populations. Nevertheless, the vast amount of data generated by CyTOF poses a daunting challenge for analysis. To address this, we...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: ba103e1a-2275-5ddd-ae26-e34df39220c2
DOI: 10.1101/2024.01.15.575790

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

ImmCellTyper: an integrated computational pipeline for systematic mining of Mass Cytometry data to assist deep immune profilingDOI 10.1101/2024.01.15.575790Read

Unsupervised Analysis of Flow Cytometry Data in a Clinical Setting Captures Cell Diversity and Allows Population Discovery.Semantic proximity Read

Cyclone: an accessible pipeline to analyze, evaluate and optimize multiparametric cytometry dataSemantic proximity Read

Accurate, fast and memory efficient quantification of immune cell phenotypes in cytometry using machine learningSemantic proximity Read

Automated cell type annotation and exploration of single cell signalling dynamics using mass cytometrySemantic proximity Read

Cyto-Feature Engineering: A Pipeline for Flow Cytometry Analysis to Uncover Immune Populations and Associations with Disease.Semantic proximity Read

ImmunoPheno: A Computational Framework for Data-Driven Design and Analysis of Immunophenotyping ExperimentsSemantic proximity Read

Automated and reproducible cell identification in mass cytometry using neural networks.Semantic proximity Read

Cytometry Masked Autoencoder: An Accurate and Interpretable Automated ImmunophenotyperSemantic proximity Read

Resolving Immune Lineage and Cell-State Heterogeneity in Human PBMCs via Mass Spectrometry-Based Single-Cell ProteomicsSemantic proximity Read

treekoR: identifying cellular-to-phenotype associations by elucidating hierarchical relationships in high-dimensional cytometry data.Semantic proximity Read

TerraFlow, A New High Parameter Data Analysis Tool, Reveals Systemic T-cell Exhaustion and Dysfunctional Cytokine Production in Classical Hodgkin LymphomaSemantic proximity Read

Integration of Transcriptome and Cell Surface Protein Expression by LinQ-View Identifies Unique Immune SubpopulationsSemantic proximity Read