Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data

Abstract excerpt

The rapidly growing collection of public single-cell sequencing data have become a valuable resource for molecular, cellular and microbial discovery. Previous studies mostly overlooked detecting pathogens in human single-cell sequencing data. Moreover, existing bioinformatics tools lack the scalability to deal with big public data. We introduce Vulture, a scalable cloud-based pipeline that performs microbial calli...

Topics

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• Animal Virus Infections Studies
• Data-Driven Disease Surveillance
• Genomics and Phylogenetic Studies
• Gut microbiota and health
• Mycobacterium research and diagnosis
• SARS-CoV-2 and COVID-19 Research
• Single-cell and spatial transcriptomics
• Zoonotic diseases and public health

Identifiers and source

Literature Corpus work

b83eb036-ae0d-55d1-86a8-8b4bea34453d

DOI

10.1101/2023.02.13.528411