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VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data

21 Sept 2020

Abstract excerpt

SUMMARY: The possibility that RNA transcripts from clinical samples contain plenty of virus RNAs has not been pursued actively so far. We here developed a new tool for analyzing virus-transcribed mRNAs, not virus copy numbers, in the data of bulk and single-cell RNA-sequencing of human cells. Our pipeline, named VIRTUS (VIRal Transcript Usage Sensor), was able to detect 762 viruses including herpesviruses,...

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PMID: 33017003
DOI: 10.1093/bioinformatics/btaa859

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