Article

SodaPop: A computational suite for simulating the dynamics of asexual populations

2017-09-15

Abstract excerpt

<h4>Motivation</h4> Simulating protein evolution with realistic constraints from population genetics is essential in addressing problems in molecular evolution, from understanding the forces shaping the evolutionary landscape to the clinical challenges of antibiotic resistance, viral evolution and cancer. <h4>Results</h4> To address this need, we present SodaPop, a new forward-time simulator of large asexual pop...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: b6c525ae-8be1-5103-97ee-d94ed6f47101
DOI: 10.1101/189142

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

SodaPop: A computational suite for simulating the dynamics of asexual populationsDOI 10.1101/189142Read

VIRAPOPS: a forward simulator dedicated to rapidly evolved viral populations.Semantic proximity Read

Geno-Diver: A combined coalescence and forward-in-time simulator for populations undergoing selection for complex traits.Semantic proximity Read

Inferring protein fitness landscapes from laboratory evolution experiments.Semantic proximity Read

AMaLa: Analysis of Directed Evolution Experiments via Annealed Mutational Approximated Landscape.Semantic proximity Read

GeneEvolve: a fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data.Semantic proximity Read

<i>evosim</i> : fast and scalable stochastic simulations of evolutionary dynamicsSemantic proximity Read

Controlling the speed and trajectory of evolution with counterdiabatic drivingSemantic proximity Read

[Dynamics of protein evolution].Semantic proximity Read

SFS_CODE: More Efficient and Flexible Forward SimulationsSemantic proximity Read

Modeling Sequence-Space Exploration and Emergence of Epistatic Signals in Protein Evolution.Semantic proximity Read

Simulating Evolution in Asexual Populations with Epistasis.Semantic proximity Read

How often do Protein Genes Navigate Valleys of Low Fitness?Semantic proximity Read