Ultra-fast genotyping of SNPs and short indels using GPU acceleration

Abstract excerpt

As decreasing DNA sequencing costs leads to a steadily increasing rate of generated data, the development of efficient algorithms for processing of the sequence data is increasingly important to reduce costs and energy consumption. Recent work have shown that genotyping can be done efficiently and accurately using alignment-free methods that are based on analyzing kmers from sequenced reads. In particular, we have...

Topics

Open a Topic to create a Post that cites this publication.

• Algorithms
• Bayes Theorem
• Genome, Human
• Genotyping Techniques
• High-Throughput Nucleotide Sequencing
• INDEL Mutation
• Polymorphism, Single Nucleotide
• Sequence Analysis, DNA

Identifiers and source

Literature Corpus work

b0e676ef-3b6d-5cbd-bc8e-ead28fb6c040

DOI

10.1101/2023.04.14.534526