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Article

Fast genotyping of known SNPs through approximate k-mer matching.

Bioinformatics (Oxford, England) - 1 Sept 2016

Shajii Ariya, Yorukoglu Deniz, William Yu Yun, Berger Bonnie

Abstract excerpt

MOTIVATION: As the volume of next-generation sequencing (NGS) data increases, faster algorithms become necessary. Although speeding up individual components of a sequence analysis pipeline (e.g. read mapping) can reduce the computational cost of analysis, such approaches do not take full advantage of the particulars of a given problem. One problem of great interest, genotyping a known set of variants (e.g. dbSNP...

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PMID: 27587672
DOI: 10.1093/bioinformatics/btw460
PMCID: PMC5013917

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