SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics

Abstract excerpt

<title>Abstract</title> <p>Efficiently mapping of cell types in situ remains a major challenge in spatial transcriptomics. Most spot deconvolution tools ignore spatial coordinate information and perform extremely slow on large datasets. We introduce SpatialPrompt, a spatially aware and scalable tool for spot deconvolution and domain identification. SpatialPrompt integrates gene expression, spatial location, and s...

Topics

Open a Topic to create a Post that cites this publication.

• Biomarkers, Tumor
• Gene Expression
• Gene Expression Profiling
• Image Processing, Computer-Assisted
• Neural Networks, Computer
• Phenotype
• Single-cell and spatial transcriptomics
• Transcriptome

Identifiers and source

Literature Corpus work

ad1d9fd7-e84d-507e-a7bb-c7dc73c7ba34

DOI

10.21203/rs.3.rs-3582903/v1