Article

Bayesian compositional regression with microbiome features via variational inference

2023-02-13

Abstract excerpt

<title>Abstract</title> <p>The microbiome plays a key role in the health of the human body. Interest often lies in finding features of the microbiome, alongside other covariates, which are associated with a phenotype of interest. One important property of microbiome data, which is often overlooked, is its compositionality as it can only provide information about the relative abundance of its constituting componen...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: acfe2040-1623-5e4b-b9eb-7ff7e04ac0fc
DOI: 10.21203/rs.3.rs-1401242/v2

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 11 closest

Bayesian compositional regression with microbiome features via variational inferenceDOI 10.21203/rs.3.rs-1401242/v2Read

Dirichlet-multinomial modelling outperforms alternatives for analysis of microbiome and other ecological count dataSemantic proximity Read

Association of Body Index with Fecal Microbiome in Children Cohorts with Ethnic-Geographic Factor Interaction: Accurately Using a Bayesian Zero-inflated Negative Binomial Regression ModelSemantic proximity Read

Negative Binomial factor regression with application to microbiome data analysisSemantic proximity Read

Zero-inflated Bayesian factor analysis model with skew-normal priors for modeling microbiome dataSemantic proximity Read

Compositional knockoff filter for high-dimensional regression analysis of microbiome dataSemantic proximity Read

DeepBioSim: Efficient and Versatile Methods for Microbiome Data Simulation with Minimal Statistical AssumptionsSemantic proximity Read

Randomized Feature Selection Based Semi-Supervised Latent Dirichlet Allocation for Microbiome AnalysisSemantic proximity Read

Bayesian biclustering for microbial metagenomic sequencing data via multinomial matrix factorizationSemantic proximity Read

Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencingSemantic proximity Read

Microbial diversity estimation and hill number calculation using the hierarchical Pitman-Yor processSemantic proximity Read

Bayesian Sparse Mixed-Response Species Distribution Models with Spatial DependenceSemantic proximity Read