Article

Identification of potential SARS-CoV-2 genetic markers resulting from host domestication

2024-09-13

Abstract excerpt

<title>Abstract</title> <p>We developed a <italic>k</italic>-mer-based pipeline, namely the Pathogen Origin Recognition Tool using Enriched <italic>K</italic>-mers (PORT-EK) to identify genomic regions enriched in the respective hosts after the comparison of metagenomes of isolates between two host species. Using it we identified thousands of <italic>k</italic>-mers enriched in US white-tailed deer and betacorona...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: aa617534-e0cb-500a-ae71-a6f9074bf5ec
DOI: 10.21203/rs.3.rs-4863529/v1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Identification of potential SARS-CoV-2 genetic markers resulting from host domesticationDOI 10.21203/rs.3.rs-4863529/v1Read

Identification of potential SARS-CoV-2 genetic markers resulting from host domesticationSemantic proximity Read

Zooanthroponotic transmission of SARS-CoV-2 and host-specific viral mutations revealed by genome-wide phylogenetic analysisSemantic proximity Read

Exploration of hosts and transmission traits for SARS-CoV-2 based on the k-mer natural vectorSemantic proximity Read

ACoRE: Accurate SARS-CoV-2 genome reconstruction for the characterization of intra-host and inter-host viral diversity in clinical samples and for the evaluation of re-infectionsSemantic proximity Read

Host independent deletion hotspots in the SARS-CoV-2 genomeSemantic proximity Read

Zooanthroponotic transmission of SARS-CoV-2 and host-specific viral mutations revealed by genome-wide phylogenetic analysis.Semantic proximity Read

A comparative phylogenomic analysis of SARS-CoV-2 strains reported from non-human mammalian species and environmental samplesSemantic proximity Read

Analysis of SARS-CoV-2 variants from 24,181 patients exemplifies the role of globalisation and zoonosis in pandemicsSemantic proximity Read

Genetic Analysis Tracks SARS-CoV-2 Mutations in Human Hosts.Semantic proximity Read

Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns.Semantic proximity Read

SARS‐CoV‐2′s claimed natural origin is undermined by issues with genome sequences of its relative strainsSemantic proximity Read

Genome similarities between human-derived and mink-derived SARS-CoV-2 make mink a potential reservoir of the virusSemantic proximity Read