Article

PanSpace: Fast and Scalable Indexing for Massive Bacterial Databases

2025-03-19

Abstract excerpt

<h4>Motivation</h4> Species identification is a critical task in agriculture, food processing, and health-care. The rapid growth of genomic databases — driven in part by the increasing investigation of bacterial genomes in clinical microbiology — has outpaced the capabilities of conventional tools such as BLAST for basic search and query tasks. A key bottleneck in microbiome studies lies in building indexes that...

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Literature Corpus work: a86bb993-9e05-5382-b16d-77f15678bc4d
DOI: 10.1101/2025.03.19.644115

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