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regentrans: a framework and R package for using genomics to study regional pathogen transmission

2021-07-30

Abstract excerpt

Increasing evidence of regional pathogen transmission networks highlights the importance of investigating the dissemination of multidrug-resistant organisms (MDROs) across a region to identify where transmission is occurring and how pathogens move across regions. We developed a framework for investigating MDRO regional transmission dynamics using whole-genome sequencing data and created regentrans, an easy-to-use,...

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Literature Corpus work
a217a2e3-4010-505c-84b4-66dbef6a8027
DOI
10.1101/2021.07.25.21261097
Open publication

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regentrans: a framework and R package for using genomics to study regional pathogen transmissionDOI 10.1101/2021.07.25.21261097
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