Article

Highly accurate prophage island detection with PIDE

2025-03-01

Abstract excerpt

As important mobile elements in prokaryotes, prophages shape the genomic context of their hosts and regulate the structure of bacterial populations. However, it is challenging to precisely identify prophages through computational methods. Here, we introduce PIDE for identifying prophages from bacterial genomes or metagenome-assembled genomes. PIDE integrates a pre-trained protein language model and gene density cl...

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Literature Corpus work: a0f7a5cb-6abf-505f-aeb3-20c6e019dcdc
DOI: 10.1101/2025.02.26.640259

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