BioHackJP 2023 Report R3: Expand the pathway analysis environment to non-model organisms

Abstract excerpt

<p>Despite decades of pathway database efforts and freely available pathway modeling tools, most researchers publish their biological pathway knowledge as static image figures made with general illustration tools. Prior to the BioHackathon, we had identified 103,009 pathway figures in the literature and performed optical character recognition (OCR) (Pathway Figure OCR (Hanspers et al., 2020). As an initial explora...

Topics

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• Bioinformatics and Genomic Networks
• Databases, Protein
• Genomics
• Knowledge Bases
• Metabolic Networks and Pathways
• Mutation
• Protein Interaction Maps
• Proteome

Identifiers and source

Literature Corpus work

9efa1de7-4f94-5699-b9c4-84326fc2267b

DOI

10.37044/osf.io/4uskb