Article

A schema for digitized surface swab site metadata in open-source DNA sequence databases

2022-12-15

Abstract excerpt

<h4>ABSTRACT</h4> Large, open-source DNA sequence databases have been generated, in part, through the collection of microbial pathogens from swabbing surfaces in built environments. Analyzing these data in aggregate through public health surveillance requires digitization of the complex, domain-specific metadata associated with swab site locations. However, the swab site location information is currently collecte...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 9e6763ac-2667-5bee-919a-3e376a92dabb
DOI: 10.1101/2022.12.15.520583

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

A schema for digitized surface swab site metadata in open-source DNA sequence databasesDOI 10.1101/2022.12.15.520583Read

Optimizing Open Data to Support One Health: Best Practices to Ensure Interoperability of Genomic Data from Microbial PathogensSemantic proximity Read

Ten recommendations for supporting open pathogen genomic analysis in public healthSemantic proximity Read

Data sharing considerations to maximize the use of pathogen biological and genomics resources data for public healthSemantic proximity Read

The Public Health Impact of a Publically Available, Environmental Database of Microbial GenomesSemantic proximity Read

Achieving pan-microbiome biological insights via the dbBact knowledge baseSemantic proximity Read

Geospatial Resolution of Human and Bacterial Diversity with City-Scale MetagenomicsSemantic proximity Read

SnapperDB: A database solution for routine sequencing analysis of bacterial isolatesSemantic proximity Read

Genomic paradigms for food-borne enteric pathogen analysis at the USFDA: case studies highlighting method utility, integration and resolution.Semantic proximity Read

GenomicGapID: Leveraging Spatial Distribution of Conserved Genomic Sites for Broad-Spectrum Microbial IdentificationSemantic proximity Read

Shortcomings of SARS-CoV-2 genomic metadataSemantic proximity Read

cual-id: globally unique, correctable, and human-friendly sample identifiers for comparative -omics studiesSemantic proximity Read

Community needs for FAIR pathogen dataSemantic proximity Read