Article

KATK: fast genotyping of rare variants directly from unmapped sequencing reads

2020-12-23

Abstract excerpt

<h4>Motivation</h4> KATK is a fast and accurate software tool for calling variants directly from raw NGS reads. It uses predefined k-mers to retrieve only the reads of interest from the FASTQ file and calls genotypes by aligning retrieved reads locally. KATK does not use data about known polymorphisms and has NC (No Call) as default genotype. The reference or variant allele is called only if there is sufficient e...

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Literature Corpus work: 947ebf81-e733-59b9-bad6-6f2a691e1ca5
DOI: 10.1101/2020.12.23.424124

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