Article

Shallow metagenomics with Nanopore sequencing in canine fecal microbiota improved bacterial taxonomy and identified an <i>uncultured CrAssphage</i>

2019-03-21

Abstract excerpt

Long-read metagenomics –using single-molecule sequencers– has the potential to assembly entire genomes, even from complex metagenomics datasets. Using long-read metagenomics with Nanopore sequencing in pooled samples, we aim to improve the individual taxonomic profiles obtained with V4 16S rRNA massive sequencing and to assemble the fecal metagenome of healthy dogs. Fecal samples from healthy dogs were sequenced i...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 92f4c6bd-547d-5c92-b1de-4ec5cdd61243
DOI: 10.1101/585067

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Shallow metagenomics with Nanopore sequencing in canine fecal microbiota improved bacterial taxonomy and identified an <i>uncultured CrAssphage</i>DOI 10.1101/585067Read

Long-read metagenomics retrieve complete single-contig bacterial genomes from canine fecesSemantic proximity Read

Comparative metagenomic analysis of bacterial communities across rodents, dogs, and humans: Insights into public health and one health outlooksSemantic proximity Read

Hybrid, ultra-deep metagenomic sequencing enables genomic and functional characterization of low-abundance species in the human gut microbiomeSemantic proximity Read

Comprehensive Metagenomic Profiling of Diverse MicrobiomesSemantic proximity Read

HiFi Metagenomic Sequencing Enables Assembly of Accurate and Complete Genomes from Human Gut MicrobiotaSemantic proximity Read

Current state of knowledge: the canine gastrointestinal microbiomeSemantic proximity Read

Species-level characterization of the core microbiome in healthy dogs using full-length 16S rRNA gene sequencingSemantic proximity Read

Comparison and benchmark of gut viral genomes detected from short- and long-read metagenomesSemantic proximity Read

Large scale metagenome assembly reveals novel animal-associated microbial genomes, biosynthetic gene clusters, and other genetic diversitySemantic proximity Read

Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencingSemantic proximity Read

Analysis of Intestinal Microbial Diversity in Domestic Dogs Around Tangjiahe Nature Reserve, Giant Panda National ParkSemantic proximity Read

Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read SequencingSemantic proximity Read