Article

Look4LTRs: A Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

2023-07-29

Abstract excerpt

Plant genomes include large numbers of transposable elements. One particular type of these elements is flanked by two Long Terminal Repeats (LTRs) and can translocate using RNA. Such elements are known as LTR-retrotransposons; they are the most abundant type of transposons in plant genomes. They have many important functions involving gene regulation and the rise of new genes and pseudo genes in response to severe...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 9186c95a-535b-5ec3-962e-286bdd75de81
DOI: 10.1101/2023.07.28.551030

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Look4LTRs: A Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeatsDOI 10.1101/2023.07.28.551030Read

Resistify - A rapid and accurate annotation tool to identify NLRs and study their genomic organisationSemantic proximity Read

LOCATE: using Long-read to Characterize All Transposable ElementsSemantic proximity Read

Diversity and evolution of transposable elements in Arabidopsis.Semantic proximity Read

TransposonUltimate: software for transposon classification, annotation and detectionSemantic proximity Read

Detection and characterization of transposable elements.Semantic proximity Read

Identification and characterization of retro-DNAs, a new type of retrotransposons originated from DNA transposons, in primate genomesSemantic proximity Read

Association analysis of repetitive elements and R-loop formation across speciesSemantic proximity Read

Comprehensive identification of transposable element insertions using multiple sequencing technologies.Semantic proximity Read

Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.Semantic proximity Read

What makes up plant genomes: The vanishing line between transposable elements and genes.Semantic proximity Read

Association analysis of repetitive elements and R-loop formation across speciesSemantic proximity Read

Discovery of novel genes derived from transposable elements using integrative genomic analysis.Semantic proximity Read