Article

Learning novel SARS-CoV-2 lineages from wastewater sequencing data

2024-03-28

Abstract excerpt

<title>Abstract</title><p>Background: Wastewater surveillance of SARS-CoV-2 has emerged as a critical tool for tracking the spread of COVID-19.In addition to estimating the relative case numbers using quantitative PCR, SARS-CoV-2 genomic RNA can be extracted from wastewater and sequenced.There are many existing techniques for using the sequenced RNA to determine the relative abundance of known lineages in a sample...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 7bbdbd04-91ff-5935-837f-b66ca00b6145
DOI: 10.21203/rs.3.rs-4159693/v1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Learning novel SARS-CoV-2 lineages from wastewater sequencing dataDOI 10.21203/rs.3.rs-4159693/v1Read

Reconstructing SARS-CoV-2 lineages from mixed wastewater sequencing dataSemantic proximity Read

Alcov: Estimating Variant of Concern Abundance from SARS-CoV-2 Wastewater Sequencing DataSemantic proximity Read

Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmissionSemantic proximity Read

Wastewater surveillance without prior lineage classification for reliable real time SARS-CoV-2 variant identificationSemantic proximity Read

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniquesSemantic proximity Read

UnMuted: Defining SARS-CoV-2 lineages according to temporally consistent mutation clusters in wastewater samples.Semantic proximity Read

Detecting SARS-CoV-2 lineages and mutational load in municipal wastewater; a use-case in the metropolitan area of Thessaloniki, GreeceSemantic proximity Read

Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2Semantic proximity Read

Detecting SARS-CoV-2 lineages and mutational load in municipal wastewater; a use-case in the metropolitan area of Thessaloniki, GreeceSemantic proximity Read

Balancing Accuracy and Actionability: An Assessment of Minimal- Input Wastewater Models for COVID-19 PredictionSemantic proximity Read

Unsupervised detection of novel SARS-CoV-2 mutations and lineages in wastewater samples using long-read sequencingSemantic proximity Read

QuaID: Enabling Earlier Detection of Recently Emerged SARS-CoV-2 Variants of Concern in WastewaterSemantic proximity Read