Article

ScAN1.0: A Reproducible and Standardized Pipeline for Processing 10X Single Cell Rnaseq Data

2022-11-08

Abstract excerpt

1 Single cell transcriptomics has recently seen a surge in popularity, leading to the need for data analysis pipelines that are reproducible, modular, and interoperable across different systems and institutions. To meet this demand, we introduce scAN1.0 , a processing pipeline for analyzing 10X single cell RNA sequencing data. scAN1.0 is built using the Nextflow DSL2 and can be run on most computational systems....

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 6636bee4-2524-5179-8b14-8ee03dcbf3c4
DOI: 10.1101/2022.11.07.515546

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

ScAN1.0: A Reproducible and Standardized Pipeline for Processing 10X Single Cell Rnaseq DataDOI 10.1101/2022.11.07.515546Read

scAmpi - A versatile pipeline for single-cell RNA-seq analysis from basics to clinicsSemantic proximity Read

Highly Multiplexed Single-Cell Full-Length cDNA Sequencing of human immune cells with 10X Genomics and R2C2Semantic proximity Read

Exploring and analysing immune single cell multi-omics data with VDJViewSemantic proximity Read

CellHeap: A scRNA-seq workflow for large-scale bioinformatics data analysisSemantic proximity Read

Exploring and analysing single cell multi-omics data with VDJViewSemantic proximity Read

Exploring and analysing single cell multi-omics data with VDJViewSemantic proximity Read

DIscBIO: a user-friendly pipeline for biomarker discovery in single-cell transcriptomicsSemantic proximity Read

Evaluation of single-cell RNA profiling technologies using FFPE, fresh, and frozen ccRCC tumor specimensSemantic proximity Read

scRICA: An R package for multiple-sample single-cell RNA-seq data integrative comparative analysisSemantic proximity Read

Single-cell sequencing of full-length transcripts and T-cell receptors with automated high-throughput Smart-seq3Semantic proximity Read

<i>CROCKETA:</i> An automated framework for comprehensive multi-omic analysis of gene expression and clonotype immune repertoire at a single-cell levelSemantic proximity Read

Comparative analysis of commercially available single-cell RNA sequencing platforms for their performance in complex human tissuesSemantic proximity Read