Article

HPAStainR: a Bioconductor and Shiny app to query protein expression patterns in the Human Protein Atlas

2021-03-22

Abstract excerpt

The Human Protein Atlas is a website of protein expression in human tissues. It is an excellent resource of tissue and cell type protein localization, but only allows the query of a single protein at a time. We introduce HPAStainR as a new Shiny app and Bioconductor/R package used to query the scored staining patterns in the Human Protein Atlas with multiple proteins/genes of interest. This allows the user to dete...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 58e21e8f-ba33-532b-b5c1-1c5c6e542673
DOI: 10.12688/f1000research.26771.2

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

HPAStainR: a Bioconductor and Shiny app to query protein expression patterns in the Human Protein AtlasDOI 10.12688/f1000research.26771.2Read

HPAanalyze: An R Package that Facilitates the Retrieval and Analysis of The Human Protein Atlas DataSemantic proximity Read

The Human Protein Atlas—a tool for pathologySemantic proximity Read

Genome-wide single cell annotation of the human protein-coding genesSemantic proximity Read

A Genecentric Human Protein Atlas for Expression Profiles Based on AntibodiesSemantic proximity Read

Organism-scale annotation with Pan-human AzimuthSemantic proximity Read

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and UsageSemantic proximity Read

Production of Tissue Microarrays, Immunohistochemistry Staining and Digitalization Within the Human Protein AtlasSemantic proximity Read

Tissue Registration and Exploration User Interfaces in support of a Human Reference AtlasSemantic proximity Read

Algorithms for a Commons Cell AtlasSemantic proximity Read

Genoppi is an open-source software for robust and standardized integration of proteomic and genetic data.Semantic proximity Read

Deep topographic proteomics of a human brain tumourSemantic proximity Read

Neutools: A collection of bioinformatics web tools for neurogenomic analysisSemantic proximity Read