Article

Generating Biomedical Knowledge Graphs from Knowledge Bases, Registries, and Multiomic Data

2024-11-15

Abstract excerpt

As large clinical and multiomics datasets and knowledge resources accumulate, they need to be transformed into computable and actionable information to support automated reasoning. These datasets range from laboratory experiment results to electronic health records (EHRs). Barriers to accessibility and sharing of such datasets include diversity of content, size and privacy. Effective transformation of data into in...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 45ac9bc5-4bf8-53a2-b930-758386989c14
DOI: 10.1101/2024.11.14.623648

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Generating Biomedical Knowledge Graphs from Knowledge Bases, Registries, and Multiomic DataDOI 10.1101/2024.11.14.623648Read

A Framework for Automated Construction of Heterogeneous Large-Scale Biomedical Knowledge GraphsSemantic proximity Read

KRAKEN: A provenance-tracked knowledge graph for multiomic and wellness researchSemantic proximity Read

HEAL-KGGen: A Hierarchical Multi-Agent LLM Framework with Knowledge Graph Enhancement for Genetic Biomarker-Based Medical DiagnosisSemantic proximity Read

Assembly and reasoning over semantic mappings at scale for biomedical data integrationSemantic proximity Read

The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical DataSemantic proximity Read

Organizing knowledge to enable faster data interpretation in COVID-19 researchSemantic proximity Read

Expanding a Database-derived Biomedical Knowledge Graph via Multi-relation Extraction from Biomedical AbstractsSemantic proximity Read

Petagraph: A large-scale unifying knowledge graph framework for integrating biomolecular and biomedical dataSemantic proximity Read

Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the BiotequeSemantic proximity Read

KG-Orchestra: An Open-Source Multi-Agent Framework for Evidence-Based Biomedical Knowledge Graphs EnrichmentSemantic proximity Read

Leveraging a Billion-Edge Knowledge Graph for Drug Re-purposing and Target Prioritization using Genomically-Informed SubgraphsSemantic proximity Read

Clinical Knowledge Graph Integrates Proteomics Data into Clinical Decision-MakingSemantic proximity Read